species:   Scscl
pid:       PID1707
parent:    Ssc-milR-183
paralog:   
locus:     NW_001820832.1:1693647-1693730
matures:   ['UUUGGUCAUUGGAGAGCCGAACU', 'UAAAGGUCUAUACUGAUCAUAAAG']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820832.1:1693647-1693730

0 out of bounds
13 alignments
2 proper strand
1 stranded perfect matches

        *************************                  **************************       
CGCAAAGUCUUUUGGUCAUUGGAGAGCCGAACUCAUAGGAUCCCCUUUUCAGGUAAAGGUCUAUACUGAUCAUAAAGCUUUGGA
..(((((.((((((((((.((.(((.((..(((...(((....))).....)))...))))).)).)))))).)))))))))..
----------UUUGGUCAUUGGAGAGCCGAACU--------------------------------------------------- l=23 a=0 c
-----------------------------------------------------UAAAGGUCUAUACUGAUCAUAAAG------- l=24 a=0 c*
-----------------------------------UAGGAUCCCCUUUUCAGGUAAA--------------------------- l=22 a=1 ma
-----------------------------------------------------UAAAGGUCUAUACUGAUCAUAAAG------- l=24 a=0 ma*

-----------------------------------UAGGAUCCCCUUUUCAGGUAAA--------------------------- l=22 a=1 (ma)
---------------------------CGAACUCAUAGGAUCCCuUUUU----------------------------------- l=22 a=1 

mb-00010
ax-1001011
ku-01
ss-110111001100
fn-001
